miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|124670426|gb|EH765166.1|EH765166 GACATCAAAACGATAATAACGATGGCCATGAAAGCTCATCGTCATCGTCATCATCATCAAATGCTCCACCGGCTTTTAGA
CCCCACACAGGTGGTGATGTGCGATGGGAAGCCATCAATTCTGTTATTGCAAGAGATCGAGAAATCGGGCTCAGCCATTT
CAAATTGTTGAAAAGACTTGGATATGGAGATATTGGAAGTGTGTATCTAGTGGAATTAAGAGGAACCAATACCTTCTTTG
CAATGAAAGTTATGGACAAGGCTCCTTTAGCCAGTCGAAACAAGCTGCTTCGAGCCCAGACCGAAAGAGAGATTTTGGGT
CTTCTCGATCACCCCTTCTTGCCAACTCTATATTCTTACTTTGAAACCGATAAGTTTTATTGCTTGGTTATGGAATTCTG
TAGCGGAGGTAATCTCCATACTCTTAGACAAAAGCAACCCAACAAGCATTTTACCGAGGATGCAACCAGGTTCTTCGCGT
CAGAAATACTATTGGCACTTGAATACCTGCACATGTTGGGGATCGTTTACAGGGATCTGAAGCCAGAAAACGTACTTGTT
AGAGATGAGGGCCATATCATGCTTTCTGATTTTGACCCTTCACTCCGTTGTTCCGTCAACCCAACTCTCGTTAAGTCTTC
ATCGGTGCATAGCGGCAACCATAATGGTGCCCATAGCGGAGGCGGAGGTGGAGGAGGTGGCGGAGGAGGAGGTGGTATGG
TGGACGATGACAATACGGTTGTACCAACTAGCAATCAAGCATCAAACTTTTTTCCAAGGATCTTGCCTAAGAAGAACCGC
AAATCGAAATCAGATT




Most similar to sp|A2YBX5|G11A_ORYSI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|A2YBX5|G11A_ORYSI Protein kinase G11A OS=Oryza sativa subsp.
           indica GN=OsI_021818 PE=2 SV=1
          Length = 589

 Score =  289 bits (739), Expect = 2e-77
 Identities = 148/246 (60%), Positives = 180/246 (73%)
 Frame = +3

Query: 78  RPHTGGDVRWEAINSVIARDREIGLSHFKLLKRLGYGDIGSVYLVELRGTNTFFAMKVMD 257
           +PH   D RWEAI  +  RD  +GLSHFKLLK+LG GDIGSVYL EL GT ++FAMKVMD
Sbjct: 168 KPHKANDSRWEAIQMIRTRDGILGLSHFKLLKKLGCGDIGSVYLSELNGTKSYFAMKVMD 227

Query: 258 KAPLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHTLRQKQ 437
           KA LASR KLLRAQTE+EIL  LDHPFLPTLY++FETDKF CLVMEFC GG+LHTLRQ+Q
Sbjct: 228 KASLASRKKLLRAQTEKEILQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQ 287

Query: 438 PNKHFTEDATRFFASEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDPSLRCSV 617
             K+F E A +F+ +EILLA+EYLHMLGI+YRDLKPENVLVR++GHIMLSDFD SLRC+V
Sbjct: 288 RGKYFPEQAVKFYVAEILLAMEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAV 347

Query: 618 NPTLVKSSSVHSGNHNGAHSXXXXXXXXXXXXXMVDDDNTVVPTSNQASNFFPRILPKKN 797
           +PTL++SS+  +      +              M+   +   PT+     FF +   KK+
Sbjct: 348 SPTLIRSSNPDAEALRKNNQAYCVQPACVEPSCMI-QPSCATPTTCFGPRFFSK--SKKD 404

Query: 798 RKSKSD 815
           RK K +
Sbjct: 405 RKPKPE 410